Information

Column

Antimicrobial Resistance Report: Standard

REPORT DATE PROJECT NAME PREPARED BY
20250301 test S. Chill

METHODS

The figures shown here were generated using sequence data processed with the ODH AR data analysis pipeline. If you have questions about this report please contact Samantha Chill. The following databases are utilized to generate the data within this report:

  1. AMRFinderPlus database: Version 2023-04-17.1

  2. ARG-ANNOT database: Latest version NT v6 July 2019

  3. ResFinder database: v2.1.0 including until 2023-04-12 commit f46d8fc

  4. MLST database: static db generated from PubMLST.org 2023-05-02

  5. Kraken database: standard-8 db

Column

Summary

There were 4 samples analyzed and 2 samples passed quality control thresholds, while 2 failed. Failing samples included: ODHL_sample1 | ODHL_sample3.

DISCLAIMER

The information included in this report should only be used to support infection prevention measures. This report should not be used to guide treatment decisions, nor should it be included in the patient record. Whole-genome sequencing analysis is a rapidly evolving technology. Whole-genome sequencing and single nucleotide variant analysis will continue to be adjusted and refined over time due to the varied nature of bacterial genomes, limitations on available reference genomes and continual assessment of the inclusion of mobile genetic elements in this analysis. These results represent the most advanced method currently available for genome comparisons.

Datatables

Raw

Sample

Taxonomy

QC

ARGene Table

Lab Concordance

Analysis

Column

Taxonomy

ARGene Summary

Column

Notes

ARGene

This report shows a summary of all species and antimicrobial resistance genes of samples which passed QC thresholds detected using the ODH AR pipeline.